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Report for CCDS1711.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1711.2 Public Homo sapiens 2 ITSN2 24 110 108 CCDS HistoryNCBI Gene:50618Re-query CCDS DB by CCDS ID:1711.2Re-query CCDS DB by GeneID:50618See the combined annotation on chromosome 2 in Sequence Viewer

Public Note for CCDS 1711.1
The coding region has been updated to extend the N-terminus to one that is more supported by available transcript and conservation data.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 1711.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000361999.7 ENSP00000354561.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000361999.7Link to Ensembl Protein Viewer:ENSP00000354561.2Re-query CCDS DB by Nucleotide ID:ENST00000361999Re-query CCDS DB by Protein ID:ENSP00000354561
Original member Current member NCBI NM_019595.4 NP_062541.3 Accepted alive Link to Nucleotide Sequence:NM_019595.4Link to Protein Sequence:NP_062541.3Re-query CCDS DB by Nucleotide ID:NM_019595Re-query CCDS DB by Protein ID:NP_062541Link to BLAST:NP_062541.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_062541.3 1670 Q9NZM3-2 1670 100% 0 0

Chromosomal Locations for CCDS 1711.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 24203626 24203783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 24204245 24204418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 24205214 24205297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 24208237 24208319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 24209100 24209221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 24209818 24210033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 24210780 24210947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 24212650 24212748 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 24216049 24216232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 24217907 24218013 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 24220945 24221066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 24246129 24246320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 24246797 24246893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 24248629 24248750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 24248837 24248882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 24252345 24252511 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 24254367 24254431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 24257888 24258093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 24261106 24261250 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 24261561 24261742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 24270671 24270768 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 24271766 24271941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 24275713 24275849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 24286212 24286351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 24293688 24293775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 24295664 24295804 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 24298665 24298814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 24299909 24300171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 24301154 24301239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 24301965 24302102 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 24303799 24303862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 24308617 24308756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 24310284 24310380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 24310489 24310692 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 24312212 24312375 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 24313460 24313523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 24315132 24315224 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 24328052 24328082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (5013 nt):
ATGATGGCTCAGTTTCCCACAGCTATGAATGGAGGGCCAAACATGTGGGCTATTACCTCTGAAGAACGTA
CTAAGCATGACAGGCAGTTTGATAACCTCAAACCTTCAGGAGGTTACATAACAGGTGATCAAGCACGTAA
TTTTTTCCTACAATCAGGTCTGCCGGCCCCTGTTTTAGCTGAAATATGGGCTTTATCAGACCTAAACAAG
GATGGGAAGATGGATCAGCAAGAGTTCTCCATAGCTATGAAACTCATCAAACTGAAGCTTCAAGGCCAAC
AGTTGCCTGTGGTTCTCCCTCCTATTATGAAGCAACCCCCTATGTTTTCTCCATTAATTTCTGCTCGTTT
TGGAATGGGAAGCATGCCCAATCTGTCCATTCCTCAGCCATTGCCTCCAGCTGCACCTATAACATCATTG
TCTTCTGCGACTTCAGGGACCAACCTTCCTCCCTTAATGATGCCCACTCCCCTAGTGCCTTCTGTTAGCA
CATCATCATTACCAAATGGAACCGCCAGTCTCATTCAGCCTTTACCCATTCCTTATTCTTCTTCAACATT
GCCTCATGGGTCATCTTATAGTCTGATGATGGGAGGATTTGGAGGTGCTAGTATACAGAAAGCGCAGTCT
CTGATTGATTTAGGATCTAGTAGCTCAACTTCCTCGACTGCTTCACTCTCAGGGAACTCACCCAAGACTG
GGACCTCAGAGTGGGCAGTTCCTCAGCCTACAAGATTAAAATATCGGCAAAAATTTAATACTCTTGACAA
AAGTATGAGTGGATATCTCTCAGGTTTTCAAGCTAGAAATGCCCTTCTTCAGTCAAATCTTTCTCAAACT
CAGCTGGCTACTATTTGGACTCTGGCTGACGTTGATGGTGATGGACAGCTAAAAGCAGAAGAGTTTATTC
TTGCAATGCACCTTACTGACATGGCCAAAGCTGGACAGCCATTACCACTGACTTTACCTCCTGAGCTTGT
TCCTCCATCTTTCAGAGGAGGAAAGCAAATTGATTCCATTAATGGAACTCTGCCTTCATATCAGAAAATG
CAAGAAGAGGAGCCTCAGAAGAAATTACCAGTTACTTTTGAGGACAAACGGAAAGCCAACTATGAGCGAG
GGAACATGGAGCTGGAAAAGCGACGCCAAGCCTTGATGGAGCAGCAACAAAGGGAGGCAGAACGTAAAGC
CCAGAAAGAAAAGGAAGAGTGGGAACGAAAACAGAGAGAATTACAAGAACAAGAATGGAAGAAACAACTT
GAATTAGAAAAACGCTTAGAGAAGCAACGGGAATTGGAGAGACAACGAGAGGAAGAAAGGAGAAAAGACA
TAGAAAGACGAGAGGCAGCAAAACAGGAACTTGAACGACAACGTCGCTTAGAATGGGAGAGAATTCGGCG
ACAGGAGCTTCTCAATCAAAAGAATAGAGAACAAGAAGAAATTGTCAGGTTAAACTCTAAAAAGAAGAAT
CTTCATCTTGAGTTGGAAGCACTGAATGGCAAACATCAGCAGATCTCAGGCAGACTTCAGGATGTCCGAC
TCAAAAAGCAAACTCAAAAGACTGAGCTGGAAGTTCTGGATAAGCAGTGTGACTTGGAAATTATGGAAAT
CAAGCAACTTCAACAGGAACTTCAGGAATATCAGAATAAGCTTATCTATCTGGTACCTGAGAAGCAATTA
TTAAATGAAAGAATTAAAAACATGCAGTTCAGTAACACACCTGATTCAGGGGTCAGTTTACTTCATAAAA
AATCATTAGAAAAGGAAGAATTATGCCAAAGACTTAAAGAACAGTTAGATGCTCTTGAAAAAGAAACTGC
ATCTAAGCTGTCAGAAATGGATTCTTTTAACAATCAACTAAAGGAACTGAGAGAAACCTACAACACACAG
CAGTTAGCCCTTGAACAGCTTTATAAGATCAAACGTGACAAGTTGAAGGAAATTGAAAGGAAAAGATTAG
AACTAATGCAGAAAAAGAAACTAGAAGATGAGGCTGCAAGGAAAGCAAAGCAAGGAAAAGAAAACTTATG
GAAAGAAAATCTTAGAAAGGAGGAAGAAGAAAAACAAAAGCGACTCCAGGAAGAAAAAACACAAGAAAAA
ATTCAAGAAGAGGAACGGAAAGCTGAGGAGAAACAACGTAAGGATAAGGATACTTTGAAAGCTGAGGAGA
AAAAACGTGAGACAGCTAGTGTTTTGGTGAATTATAGAGCATTATACCCCTTTGAAGCAAGGAACCATGA
TGAGATGAGTTTTAATTCTGGAGATATAATTCAGGTTGATGAAAAAACCGTAGGAGAACCTGGTTGGCTT
TATGGTAGTTTTCAAGGAAATTTTGGCTGGTTTCCATGCAATTATGTAGAAAAAATGCCATCAAGTGAAA
ATGAAAAAGCTGTATCTCCAAAGAAGGCCTTACTTCCTCCTACAGTTTCTTTATCTGCTACCTCAACTTC
CTCTGAACCACTTTCTTCAAATCAACCAGCATCAGTGACTGATTATCAAAATGTATCTTTTTCAAACCTA
ACTGTAAATACATCATGGCAGAAAAAATCAGCCTTCACTCGAACTGTGTCCCCTGGATCTGTATCACCTA
TTCATGGACAGGGACAAGTGGTAGAAAACTTAAAAGCACAGGCCCTTTGTTCCTGGACTGCAAAGAAAGA
TAACCACTTGAACTTCTCAAAACATGACATTATTACTGTCTTGGAGCAGCAAGAAAATTGGTGGTTTGGG
GAGGTGCATGGAGGAAGAGGATGGTTTCCCAAATCTTATGTCAAGATCATTCCTGGGAGTGAAGTAAAAC
GGGAAGAACCAGAAGCTTTGTATGCAGCTGTAAATAAGAAACCTACCTCGGCAGCCTATTCAGTTGGAGA
AGAATATATTGCACTTTATCCATATTCAAGTGTGGAACCTGGAGATTTGACTTTCACAGAAGGTGAAGAA
ATATTGGTGACCCAGAAAGATGGAGAGTGGTGGACAGGAAGTATTGGAGATAGAAGTGGAATTTTTCCAT
CAAACTATGTCAAACCAAAGGATCAAGAGAGTTTTGGGAGTGCTAGCAAGTCTGGAGCATCAAATAAAAA
ACCTGAGATTGCTCAGGTAACTTCAGCATATGTTGCTTCTGGTTCTGAACAACTTAGCCTTGCACCAGGA
CAGTTAATATTAATTCTAAAGAAAAATACAAGTGGGTGGTGGCAAGGAGAGTTACAGGCCAGAGGAAAAA
AGCGACAGAAAGGATGGTTTCCTGCCAGTCATGTTAAACTTTTGGGTCCAAGTAGTGAAAGAGCCACACC
TGCCTTTCATCCTGTATGTCAGGTGATTGCTATGTATGACTATGCAGCAAATAATGAAGATGAGCTCAGT
TTCTCCAAGGGACAACTCATTAATGTTATGAACAAAGATGATCCTGATTGGTGGCAAGGAGAGATCAACG
GGGTGACTGGTCTCTTTCCTTCAAACTACGTTAAGATGACGACAGACTCAGATCCAAGTCAACAGTGGTG
TGCTGATCTGCAAACCCTGGACACAATGCAGCCAATTGAGAGGAAAAGACAGGGCTATATTCATGAGCTG
ATTCAGACCGAAGAGCGGTACATGGCTGACCTTCAGCTCGTCGTCGAGGTTTTTCAGAAACGCATGGCAG
AGTCAGGCTTTCTCACTGAAGGGGAGATGGCCCTGATTTTTGTTAACTGGAAGGAGCTCATCATGTCCAA
CACAAAGCTGCTGAAGGCTTTGCGGGTGCGGAAGAAGACCGGGGGCGAGAAGATGCCGGTGCAGATGATT
GGGGACATCCTGGCCGCTGAGCTGTCCCACATGCAGGCTTACATCAGGTTCTGCAGCTGCCAGCTTAATG
GAGCAGCTCTGTTACAGCAGAAGACAGATGAAGACACAGATTTCAAAGAATTTTTAAAGAAGCTGGCATC
TGACCCGCGGTGTAAAGGAATGCCCCTCTCCAGCTTCCTGCTGAAACCCATGCAGAGGATCACCCGCTAC
CCACTGCTCATCAGAAGTATTCTGGAGAACACCCCGGAGAGCCATGCAGACCATTCCTCCCTAAAGCTGG
CCCTCGAGCGGGCAGAGGAGCTGTGCTCTCAAGTGAATGAGGGAGTTCGGGAGAAGGAAAACTCGGACCG
ACTGGAGTGGATCCAGGCGCACGTGCAGTGTGAAGGCCTCGCGGAGCAACTTATTTTCAACTCTCTCACC
AACTGCCTGGGGCCCCGGAAGCTCTTACACAGTGGGAAATTATACAAGACCAAGAGCAACAAGGAACTGC
ACGGATTCCTCTTCAATGACTTCCTGCTTCTTACCTACATGGTCAAGCAGTTTGCTGTTTCCTCTGGCTC
TGAGAAACTTTTCAGCTCGAAGTCCAATGCTCAATTCAAAATGTATAAAACGCCCATTTTCCTGAATGAA
GTCTTGGTGAAACTGCCCACAGACCCTTCCAGCGATGAGCCTGTCTTCCACATTTCCCACATTGATCGGG
TCTACACCCTCCGAACAGACAACATTAATGAGAGGACCGCCTGGGTGCAGAAGATCAAGGCGGCGTCTGA
GCAGTACATCGACACCGAGAAGAAGAAGCGTGAGAAAGCTTACCAAGCCCGCTCCCAAAAGACTTCAGGC
ATTGGGCGCCTGATGGTGCATGTCATTGAAGCTACAGAATTAAAAGCCTGCAAACCAAATGGAAAGAGCA
ACCCATACTGTGAAATCAGCATGGGCTCCCAGAGCTACACCACCAGGACCATCCAGGACACACTCAATCC
CAAGTGGAATTTTAACTGCCAGTTCTTTATTAAGGATCTCTACCAAGACGTGCTGTGTCTCACCCTGTTT
GACAGAGACCAGTTTTCACCAGATGATTTCCTGGGTCGTACTGAAATTCCAGTGGCAAAAATTCGAACAG
AACAGGAAAGCAAAGGCCCTATGACCCGCCGACTGCTGCTGCATGAGGTCCCCACCGGGGAGGTCTGGGT
CCGTTTTGACCTGCAGCTTTTTGAGCAAAAAACTCTCCTGTAG

Translation (1670 aa):
MMAQFPTAMNGGPNMWAITSEERTKHDRQFDNLKPSGGYITGDQARNFFLQSGLPAPVLAEIWALSDLNK
DGKMDQQEFSIAMKLIKLKLQGQQLPVVLPPIMKQPPMFSPLISARFGMGSMPNLSIPQPLPPAAPITSL
SSATSGTNLPPLMMPTPLVPSVSTSSLPNGTASLIQPLPIPYSSSTLPHGSSYSLMMGGFGGASIQKAQS
LIDLGSSSSTSSTASLSGNSPKTGTSEWAVPQPTRLKYRQKFNTLDKSMSGYLSGFQARNALLQSNLSQT
QLATIWTLADVDGDGQLKAEEFILAMHLTDMAKAGQPLPLTLPPELVPPSFRGGKQIDSINGTLPSYQKM
QEEEPQKKLPVTFEDKRKANYERGNMELEKRRQALMEQQQREAERKAQKEKEEWERKQRELQEQEWKKQL
ELEKRLEKQRELERQREEERRKDIERREAAKQELERQRRLEWERIRRQELLNQKNREQEEIVRLNSKKKN
LHLELEALNGKHQQISGRLQDVRLKKQTQKTELEVLDKQCDLEIMEIKQLQQELQEYQNKLIYLVPEKQL
LNERIKNMQFSNTPDSGVSLLHKKSLEKEELCQRLKEQLDALEKETASKLSEMDSFNNQLKELRETYNTQ
QLALEQLYKIKRDKLKEIERKRLELMQKKKLEDEAARKAKQGKENLWKENLRKEEEEKQKRLQEEKTQEK
IQEEERKAEEKQRKDKDTLKAEEKKRETASVLVNYRALYPFEARNHDEMSFNSGDIIQVDEKTVGEPGWL
YGSFQGNFGWFPCNYVEKMPSSENEKAVSPKKALLPPTVSLSATSTSSEPLSSNQPASVTDYQNVSFSNL
TVNTSWQKKSAFTRTVSPGSVSPIHGQGQVVENLKAQALCSWTAKKDNHLNFSKHDIITVLEQQENWWFG
EVHGGRGWFPKSYVKIIPGSEVKREEPEALYAAVNKKPTSAAYSVGEEYIALYPYSSVEPGDLTFTEGEE
ILVTQKDGEWWTGSIGDRSGIFPSNYVKPKDQESFGSASKSGASNKKPEIAQVTSAYVASGSEQLSLAPG
QLILILKKNTSGWWQGELQARGKKRQKGWFPASHVKLLGPSSERATPAFHPVCQVIAMYDYAANNEDELS
FSKGQLINVMNKDDPDWWQGEINGVTGLFPSNYVKMTTDSDPSQQWCADLQTLDTMQPIERKRQGYIHEL
IQTEERYMADLQLVVEVFQKRMAESGFLTEGEMALIFVNWKELIMSNTKLLKALRVRKKTGGEKMPVQMI
GDILAAELSHMQAYIRFCSCQLNGAALLQQKTDEDTDFKEFLKKLASDPRCKGMPLSSFLLKPMQRITRY
PLLIRSILENTPESHADHSSLKLALERAEELCSQVNEGVREKENSDRLEWIQAHVQCEGLAEQLIFNSLT
NCLGPRKLLHSGKLYKTKSNKELHGFLFNDFLLLTYMVKQFAVSSGSEKLFSSKSNAQFKMYKTPIFLNE
VLVKLPTDPSSDEPVFHISHIDRVYTLRTDNINERTAWVQKIKAASEQYIDTEKKKREKAYQARSQKTSG
IGRLMVHVIEATELKACKPNGKSNPYCEISMGSQSYTTRTIQDTLNPKWNFNCQFFIKDLYQDVLCLTLF
DRDQFSPDDFLGRTEIPVAKIRTEQESKGPMTRRLLLHEVPTGEVWVRFDLQLFEQKTLL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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